WikiPathways Webservices Skill
wikipathways-org
Endpoints
| Method | Path | Description |
|---|---|---|
GET | /listOrganisms | |
GET | /listPathways | listOrganisms |
GET | /getPathway | listPathways |
GET | /getPathwayInfo | getPathway |
GET | /getPathwayHistory | getPathwayInfoGet some general info about the pathway, such as the name, species, without downloading the GPML. |
GET | /getRecentChanges | getPathwayHistoryGet the revision history of a pathway. |
GET | /login | getRecentChangesGet the recently changed pathways.Note: the recent changes table only retains items for a limited time (2 months), so there is no guarantee that you will get all c... |
GET | /updatePathway | loginStart a logged in session, using an existing WikiPathways account. This function will return an authentication code that can be used to excecute methods that need authenticat... |
POST | /createPathway | updatePathwayUpdate a pathway on the wiki with the given GPML code.Note: To create/modify pathways via the web service, you need to have an account with web service write permissi... |
GET | /findPathwaysByText | createPathwayCreate a new pathway on the wiki with the given GPML code.Note: To create/modify pathways via the web service, you need to have an account with web service write perm... |
GET | /findPathwaysByXref | findPathwaysByText |
GET | /removeCurationTag | findPathwaysByXref |
GET | /saveCurationTag | removeCurationTagRemove a curation tag from a pathway. |
GET | /getCurationTags | saveCurationTag |
GET | /getCurationTagsByName | getCurationTagsGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag. |
GET | /getCurationTagHistory | getCurationTagsByNameGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag. |
GET | /getColoredPathway | getCurationTagHistory |
GET | /findInteractions | getColoredPathwayGet a colored image version of the pathway. |
GET | /getXrefList | findInteractionsFind interactions defined in WikiPathways pathways. |
GET | /findPathwaysByLiterature | getXrefList |
GET | /saveOntologyTag | findPathwaysByLiterature |
GET | /removeOntologyTag | saveOntologyTag |
GET | /getOntologyTermsByPathway | removeOntologyTag |
GET | /getPathwaysByOntologyTerm | getOntologyTermsByPathway |
GET | /getPathwaysByParentOntologyTerm | getPathwaysByOntologyTerm |
GET | /getUserByOrcid | getPathwaysByParentOntologyTerm |
Install as Skill
Use this API as a Claude Code skill for instant agent access.
CLI Install
lapsh skill-install wikipathways-org
Downloads and installs to ~/.claude/skills/wikipathways-org/
Recent Versions (1)
1.0(2026-03-02)